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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN38480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 316aa MW: 36312.1 Da PI: 6.7872 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.3 | 3.5e-10 | 246 | 280 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+++++ LA+++gL+ +q+ +WF N+R ++ KHN38480.1 246 KWPYPSESQKQALAESTGLDMKQINNWFINQRKRH 280 569*****************************885 PP | |||||||
2 | ELK | 38.4 | 2.6e-13 | 200 | 221 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLk+EF+ KHN38480.1 200 ELKVQLLRKYSGYLGSLKKEFL 221 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-14 | 66 | 110 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.3E-18 | 68 | 106 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.2E-26 | 119 | 170 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.6E-22 | 122 | 168 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.139 | 200 | 220 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.9E-9 | 200 | 221 | IPR005539 | ELK domain |
SMART | SM01188 | 7.1E-7 | 200 | 221 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.293 | 220 | 283 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-19 | 222 | 294 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-12 | 222 | 287 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 225 | 286 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.48E-12 | 232 | 284 | No hit | No description |
Pfam | PF05920 | 1.6E-17 | 240 | 279 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 258 | 281 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MIGFGGNSCS ELSEMDMTNM ETNRKFLSLP LSNNNNSGDN RRVPVTSNSI AQEHHYSHHH 60 NPTDTCSVRD KIMAHPLFPR LLSSYLNCLK VGAPPEVVAS LEESYAKYES FNASSGRIGG 120 GSIGEDPALD QFMEAYCEML IKYEQELTKP FKEAMLFFSR IECQLKALAV SSDFGQSETS 180 SKNEVDVHEN NLDSQAEDRE LKVQLLRKYS GYLGSLKKEF LKKKKNGKLP KEARQQLLDW 240 WNRHYKWPYP SESQKQALAE STGLDMKQIN NWFINQRKRH WKPSEDMQFA VMDATNYYME 300 NVMCKPFPMD SMPMLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502681.1 | 0.0 | PREDICTED: homeobox protein SBH1-like isoform X1 | ||||
Swissprot | P46608 | 1e-118 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A0B2RZR3 | 0.0 | A0A0B2RZR3_GLYSO; Homeobox protein SBH1 | ||||
STRING | GLYMA14G05150.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-102 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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